PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g071210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1703aa MW: 191379 Da PI: 5.0943

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g071210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	24	80	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k Csa20g071210.1 24 KSKRKMKTAAQLEVLETTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 80 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-17	7	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-15	17	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.244	21	81	IPR001356	Homeobox domain
SMART	SM00389	9.7E-16	23	85	IPR001356	Homeobox domain
CDD	cd00086	7.78E-13	24	81	No hit	No description
Pfam	PF00046	1.2E-15	24	80	IPR001356	Homeobox domain
SMART	SM00571	2.0E-22	534	593	IPR018501	DDT domain
PROSITE profile	PS50827	15.784	534	593	IPR018501	DDT domain
Pfam	PF02791	1.7E-16	535	590	IPR018501	DDT domain
Pfam	PF05066	1.1E-15	716	784	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-6	912	953	IPR028942	WHIM1 domain
Pfam	PF15613	1.0E-12	1085	1157	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1703 aa Download sequence Send to blast
MEGGSDEATE KNTKTPPEEG GESKSKRKMK TAAQLEVLET TYAAEPYPSE AIRADLSVKL 60 NLSDRQLQMW FCHRRLKDRK STTTTPSSKR QRKELITTPM AVESPKPAVN AADLVAGNEF 120 DSRRAARVSG SGSGSGGVTV VRRFNEPSSA EVRAVGYMEA QLGERLRDNG PILGMEFDPL 180 PPGAFGMPIE MPSHRKATRQ PFETSLYVRS DVKPSKDVRP IREYQFLPDL PSSRTDHSER 240 VSPSHHYGVP LDASVMRATT VSAGHRDGYK VSPQIPNLNL ATHQGKPGHV YSPNLPEYDS 300 PYQKSYMDTP AQRNLNDHPI HEDPFLKSER EVGNEDEDDD ALQLERKRKN EEARISRELE 360 AHEKRIRREL EKQDMLRRKR EEQLKKEMER QYRERRKEEE RLLRERQREE ERFMKEQMRE 420 LQRREKFLKK ETMRAEKMRQ KEEMRREKEV ARLKAANERA IARKIAKESM ELIEDERLEL 480 MEVAALTKGL PSMLALDFET LQNLDEYRDK QALFPPTSVK LKKPFTVKPW NGSDENVANL 540 LMVWRFLITF ADVFGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVTRTLLT 600 GVGANQNAAS NPGGGHPHVV EGAYAWGFDI RSWRRNLNVF TWPEILRQLA LSAGLGPQLK 660 KRNIKTVSVH DENEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPKRSR HRLTPGTVKF 720 AAFHVLSLEG EKGLTILDVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY 780 CVRASYRKEA GGAETILAEA RERIRAFKSG ITDVEDVDDA EREEDSESDV GDDPEIDLNP 840 KKEDPDALDI ENSVKVEPVL ENGKTKAGLP LTPSLPEDIK DEKRDDILVD QSLEDAVAND 900 ADSACFDESK LGEQWVQGLV EGDYSNLSSE ERLNALVALI GIAIEGNTIR VALEERLEVA 960 SSLKKQMWSE VQLDKRWKEE SLLRANYLSY PTAKPGLNIA TPASGNQEIS SADVTPISSQ 1020 DPLSRPQMDV NNVIAGPSLQ LQENVSGMEN LQYQQQGGYT ADRERLRAQL KAYVGYKAEE 1080 LYVYRSLPLG QDRRRNRYWR FSASASRNDP GCGRIFVELQ DGRWRLIDSE EGFDYLVKSL 1140 DVRGVRESHL HFMLLKIEAS FKESVRKNLE ATPGGLCSIS SSLDSDTAEI STTFKIELGD 1200 SNAIERDSVL QRFQSFEKWM WDNMLHPGAL SALKYGAKQS SPLFRICRTC AGLHFVEDIC 1260 CPSCGQMHAS PDVGELCFAE QVAQLGDNSR GGDTGFILRS SISSPLRIRL LKIQLALVEA 1320 SLPPEGLEAF WTEKLRKSWG LKLLSSSSPE ELNQVLTTLE VALKRDFLSS NFETTSELLG 1380 LPEEALPSDL TCMVNVLPWI PKTTGGVALR LFEFDSSIVY TPDQNNDPLK DKESEDLMGL 1440 ETNLLRNVPE KDVMETPVQG GYMQEENWTD PGLGGVSSSG RGGRPPRGRG RPRSRGSGGN 1500 GKKPAVSSSR PPRGAANTNG ETMLRPRAQP RGKKNGRRSS TKGRKRPTKG TLGISNEVVG 1560 GRLSKEVAVT AKTTLPDNED DWIETPELQD DDGEASSSGR SFQYKDYDDD EVMAPMDDFD 1620 DVGESSKLVG RGEFSLHSDD EYEEEDEEEE EEEDMNTKMD VDYINDDSFG RREQPEISND 1680 TARKRFMFDD PDLTSSSSSD YR*

Sequence ? help Back to Top

Protein Sequence Length: 1703 aa Download sequence Send to blast

MEGGSDEATE KNTKTPPEEG GESKSKRKMK TAAQLEVLET TYAAEPYPSE AIRADLSVKL  60
NLSDRQLQMW FCHRRLKDRK STTTTPSSKR QRKELITTPM AVESPKPAVN AADLVAGNEF  120
DSRRAARVSG SGSGSGGVTV VRRFNEPSSA EVRAVGYMEA QLGERLRDNG PILGMEFDPL  180
PPGAFGMPIE MPSHRKATRQ PFETSLYVRS DVKPSKDVRP IREYQFLPDL PSSRTDHSER  240
VSPSHHYGVP LDASVMRATT VSAGHRDGYK VSPQIPNLNL ATHQGKPGHV YSPNLPEYDS  300
PYQKSYMDTP AQRNLNDHPI HEDPFLKSER EVGNEDEDDD ALQLERKRKN EEARISRELE  360
AHEKRIRREL EKQDMLRRKR EEQLKKEMER QYRERRKEEE RLLRERQREE ERFMKEQMRE  420
LQRREKFLKK ETMRAEKMRQ KEEMRREKEV ARLKAANERA IARKIAKESM ELIEDERLEL  480
MEVAALTKGL PSMLALDFET LQNLDEYRDK QALFPPTSVK LKKPFTVKPW NGSDENVANL  540
LMVWRFLITF ADVFGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVTRTLLT  600
GVGANQNAAS NPGGGHPHVV EGAYAWGFDI RSWRRNLNVF TWPEILRQLA LSAGLGPQLK  660
KRNIKTVSVH DENEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPKRSR HRLTPGTVKF  720
AAFHVLSLEG EKGLTILDVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY  780
CVRASYRKEA GGAETILAEA RERIRAFKSG ITDVEDVDDA EREEDSESDV GDDPEIDLNP  840
KKEDPDALDI ENSVKVEPVL ENGKTKAGLP LTPSLPEDIK DEKRDDILVD QSLEDAVAND  900
ADSACFDESK LGEQWVQGLV EGDYSNLSSE ERLNALVALI GIAIEGNTIR VALEERLEVA  960
SSLKKQMWSE VQLDKRWKEE SLLRANYLSY PTAKPGLNIA TPASGNQEIS SADVTPISSQ  1020
DPLSRPQMDV NNVIAGPSLQ LQENVSGMEN LQYQQQGGYT ADRERLRAQL KAYVGYKAEE  1080
LYVYRSLPLG QDRRRNRYWR FSASASRNDP GCGRIFVELQ DGRWRLIDSE EGFDYLVKSL  1140
DVRGVRESHL HFMLLKIEAS FKESVRKNLE ATPGGLCSIS SSLDSDTAEI STTFKIELGD  1200
SNAIERDSVL QRFQSFEKWM WDNMLHPGAL SALKYGAKQS SPLFRICRTC AGLHFVEDIC  1260
CPSCGQMHAS PDVGELCFAE QVAQLGDNSR GGDTGFILRS SISSPLRIRL LKIQLALVEA  1320
SLPPEGLEAF WTEKLRKSWG LKLLSSSSPE ELNQVLTTLE VALKRDFLSS NFETTSELLG  1380
LPEEALPSDL TCMVNVLPWI PKTTGGVALR LFEFDSSIVY TPDQNNDPLK DKESEDLMGL  1440
ETNLLRNVPE KDVMETPVQG GYMQEENWTD PGLGGVSSSG RGGRPPRGRG RPRSRGSGGN  1500
GKKPAVSSSR PPRGAANTNG ETMLRPRAQP RGKKNGRRSS TKGRKRPTKG TLGISNEVVG  1560
GRLSKEVAVT AKTTLPDNED DWIETPELQD DDGEASSSGR SFQYKDYDDD EVMAPMDDFD  1620
DVGESSKLVG RGEFSLHSDD EYEEEDEEEE EEEDMNTKMD VDYINDDSFG RREQPEISND  1680
TARKRFMFDD PDLTSSSSSD YR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1532	1546	KKNGRRSSTKGRKRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g071210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY042893	0.0	AY042893.1 Arabidopsis thaliana Unknown protein (MLN1.10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494421.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	R0EUK2	0.0	R0EUK2_9BRAS; Uncharacterized protein
STRING	XP_010494421.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator