PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g068930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 249aa MW: 28861 Da PI: 9.3185 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 153.7 | 1.3e-47 | 2 | 83 | 1 | 80 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeae 80 ++++r+ptw+ErEnnkrRERrRR +aaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrk + + ee+e Csa20g068930.1 2 TSGTRMPTWRERENNKRRERRRREMAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKMKIEQegEEKE 83 5899******************************************************************876666333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.9E-43 | 3 | 84 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTSGTRMPTW RERENNKRRE RRRREMAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKMKIEQEGE EKEKEKRSVF GNQRRRREAD DSFNVLIVLK FAGEGGERVD 120 VQKMFAYIGL FTLVALWWLV WPLTALGMNP SLPYHTLKVD EVVLANGFVR RVLSDYFWYV 180 TMILCCQLDD SKSQAFSDNF SKNLSSTETL SLEIYHSNNN IKRNTNLSQT QKLENLLGLR 240 VNGIDTAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-20 | 6 | 72 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-20 | 6 | 72 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-20 | 6 | 72 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-20 | 6 | 72 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 24 | RRERRRRE |
2 | 19 | 24 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g068930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057538 | 2e-59 | AY057538.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds. | |||
GenBank | AY113057 | 2e-59 | AY113057.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15511 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 2e-30 | BES1/BZR1 homolog 4 |