PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 319aa    MW: 36299.5 Da    PI: 6.9473
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29107163258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++ ++ +itYeg H h
  Csa20g067200.1 107 DDGYKWRKYGQKTIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFH 163
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-27100163IPR003657WRKY domain
PROSITE profilePS5081126.188101166IPR003657WRKY domain
SuperFamilySSF1182903.53E-25102164IPR003657WRKY domain
SMARTSM007742.4E-34106165IPR003657WRKY domain
PfamPF031063.0E-24107163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAEEELSEWT RTYDNNAVED LFVNDPSLFF LPQEQHHRLM PNEDSITNTF YSLPVNSGPR  60
IQDMANALAV VEPQTHPVQE ISITTSALSK ADRYTLKVKS YTNGMCDDGY KWRKYGQKTI  120
KNSPNPRSYY KCTNPICNAK KQVERSIDES NTYIITYEGF HFHYAYPFFP PVKTHRPNKK  180
ARTLKHDAQE KLINKPSQTQ EESKKAHLIE HAYQNHSAYR SQEYTPLNLE NELFLPVDHC  240
RRHQGLLEDV VAPAKVTTPA RDSVLAASWS SLSTYTSSSG SSSRTCSPPL SPSSLCWSPN  300
VNIGFSDEIL DLIGYYNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181051631674Probable WRKY transcription factor 4
2lex_A1e-181051631674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g067200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494309.10.0PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR71e-129WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLD7MP901e-136D7MP90_ARALL; Uncharacterized protein
STRINGXP_010494309.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-119WRKY DNA-binding protein 49