PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 224aa    MW: 25204.3 Da    PI: 7.0745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-111481881055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le Av+Y+k Lq
  Csa20g067080.1 148 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 188
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12143197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14143203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-12147192No hitNo description
PfamPF000107.2E-9148188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MENGALVDGE FESLLGIFNF DQCSSDDTSF YNAPSETDAF SSDDFFPFGM ILQRNYPAVL  60
DGSNYQTNHY VDSRQELMKP RKKQKLSSEN NLVTEPKTAL RDGQSLNSFN SSDDERALGL  120
TANTSKSLKG KAKPNKRIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA  180
VHYVKFLQLQ IKLLSSDDLW MYAPLAHNGM NMGLHHNLLS RLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g067080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230304e-63AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBankCP0026884e-63CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494289.11e-166PREDICTED: transcription factor bHLH139
SwissprotQ3E7L71e-141BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A178UKI51e-138A0A178UKI5_ARATH; Uncharacterized protein
STRINGXP_010494289.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.11e-143bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]