PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g058680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 327aa    MW: 35354.4 Da    PI: 9.4907
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g058680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.6e-15164215455
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k l   +++
  Csa20g058680.1 164 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQT 215
                     79****************************************9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-18161225IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909163214IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-11163215No hitNo description
SuperFamilySSF579594.92E-12164214No hitNo description
PfamPF001701.7E-13164211IPR004827Basic-leucine zipper domain
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
PfamPF124988.6E-12232266IPR020983Basic leucine-zipper, C-terminal
PfamPF124982.5E-5291321IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEKDFSIEEI SGNHHRSAVD GATALNRSAS EWAFHRFIQE SSAAAAADDA NAGESSATAT  60
GVSVSSPPNV PVDSEEYRAF LKSKLNLACA AVAMKRGSFI KPQDTNSGRS DNGGGAYTTN  120
TSEQDSLASS KVSPMMSSAI TSGSELSGDE EEADGETNMN PTNVKRVKRM LSNRESARRS  180
RRRKQAHLSE LETQVSQLRV ENSKLMKGLT DVTQTFNDAA VENRVLKANI ETLRAKVKMA  240
EETVKRLTGF NPMFHTMPQI VTTLSRPSVT LTSPDTTSSH LTTPEIVSSG NKSKALTGCK  300
INRTASMRRV ESLEHLQKRI RSVGDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184RRSRRRKQ
2179184SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g058680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494111.10.0PREDICTED: basic leucine zipper 63
SwissprotB9DGI80.0BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A178UKA30.0A0A178UKA3_ARATH; BZO2H3
STRINGXP_010494111.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-169bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]