PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g055290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 131aa MW: 15208.4 Da PI: 8.19 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.7 | 4.2e-15 | 1 | 32 | 20 | 50 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++KKA+ELS+LCd+ev+vi++ +g+l ++++ Csa20g055290.1 1 MFKKASELSILCDIEVCVIYYDRDGELvKTWP 32 69***********************9747887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.007 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-12 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-10 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MFKKASELSI LCDIEVCVIY YDRDGELVKT WPEDQSKVRD MAERFSKLND RERRKKSRDL 60 SLFLNKKTFK DKKTSFDIKD NKFSEKVLEM EASLEIALRN QTKPDQNPMV SSAGIFTTDP 120 SLMSRTEQDL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g055290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493763 | 2e-54 | AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580. | |||
GenBank | AC007478 | 2e-54 | AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence. | |||
GenBank | AY141226 | 2e-54 | AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds. | |||
GenBank | BT025291 | 2e-54 | BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds. | |||
GenBank | CP002688 | 2e-54 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ446991 | 2e-54 | DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds. | |||
GenBank | DQ653312 | 2e-54 | DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424369.1 | 2e-74 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9N2 | 1e-37 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 5e-52 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495532.1 | 2e-77 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27580.1 | 4e-42 | AGAMOUS-like 89 |
Publications ? help Back to Top | |||
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