PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g055260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21513.8 Da PI: 10.1256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.1 | 8.2e-17 | 35 | 78 | 8 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ + R ++++KKA+ LS+LCd+ev+vi+++ +g+l ++++ Csa20g055260.1 35 KKTTNLPLREQTMFKKASKLSILCDIEVCVIYYGRDGELiKTWP 78 66777888*****************************9856886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-4 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.91E-16 | 34 | 105 | No hit | No description |
PROSITE profile | PS50066 | 9.461 | 34 | 80 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-13 | 35 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-10 | 43 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MTSSSMLTKD KTMKLLSVRN RRCFKKQPSL SFVSKKTTNL PLREQTMFKK ASKLSILCDI 60 EVCVIYYGRD GELIKTWPED QSKVQDMAER FSNLNDRERR KKSRDLSLFL NKKTLKDKKT 120 SFDIKDNKFS EKVLEMEASL ESALRVLQDK LLRLQNQTEP DQNPVVSSAG FFTTDPSLMS 180 GIEQDL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g055260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455071.1 | 1e-112 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Refseq | XP_019084677.1 | 1e-113 | PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 7e-56 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 2e-73 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495532.1 | 1e-132 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27090.1 | 1e-65 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
---|---|---|---|
|