PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g055230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29532.6 Da    PI: 8.9273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g055230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-131322050
                    HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++KKA+ELS LCd++v+vi+++  g+l ++++
  Csa20g055230.1  1 MFKKASELSNLCDIKVCVIYYGRYGELvKTWP 32
                    69***********************9747887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-8128IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-10167IPR002100Transcription factor, MADS-box
CDDcd002661.13E-15159No hitNo description
PROSITE profilePS500668.914127IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFKKASELSN LCDIKVCVIY YGRYGELVKT WPEDQSKVRD MAERFSKLND RERRKNSTNL  60
SLILNKKTLK DKKTFFDIKD NRFSEKVLEI EASLESALRV LQDKLLRLQN QTKPDQNPVV  120
SSASFFTTDA SLMSGVSKTK QDLSTPSLTQ QHQSKVSVFL YNHDNGSFCQ LSHSVSGFDP  180
SMSTASLGAQ GLCLRSNDSD LPMVFPPQMQ TQTPPLVHFD QFVGWNNQTP SSFADPLTFS  240
SYNSIRSLTR SMVYYFLLCI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g055230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495530.10.0PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H93e-84AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1191e-109R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495530.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.12e-80AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]