PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g055230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29532.6 Da PI: 8.9273 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.5 | 1.7e-13 | 1 | 32 | 20 | 50 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++KKA+ELS LCd++v+vi+++ g+l ++++ Csa20g055230.1 1 MFKKASELSNLCDIKVCVIYYGRYGELvKTWP 32 69***********************9747887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.6E-8 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-10 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.13E-15 | 1 | 59 | No hit | No description |
PROSITE profile | PS50066 | 8.914 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MFKKASELSN LCDIKVCVIY YGRYGELVKT WPEDQSKVRD MAERFSKLND RERRKNSTNL 60 SLILNKKTLK DKKTFFDIKD NRFSEKVLEI EASLESALRV LQDKLLRLQN QTKPDQNPVV 120 SSASFFTTDA SLMSGVSKTK QDLSTPSLTQ QHQSKVSVFL YNHDNGSFCQ LSHSVSGFDP 180 SMSTASLGAQ GLCLRSNDSD LPMVFPPQMQ TQTPPLVHFD QFVGWNNQTP SSFADPLTFS 240 SYNSIRSLTR SMVYYFLLCI * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g055230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495530.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9H9 | 3e-84 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0H119 | 1e-109 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495530.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26950.1 | 2e-80 | AGAMOUS-like 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|