PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g054160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 138aa    MW: 15261.8 Da    PI: 10.1077
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g054160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.52.2e-092847120
            GATA  1 CsnCgttkTplWRrgpdgnk 20
                    Cs C+ttkTp+WR gp g+k
  Csa20g054160.1 28 CSDCKTTKTPMWRGGPTGPK 47
                    ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.0252251IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-112291IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-82275No hitNo description
Gene3DG3DSA:3.30.50.105.6E-112575IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.2E-72847IPR000679Zinc finger, GATA-type
CDDcd002026.82E-82875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDPRQLRSCS SSYVSTRIEE EKVITRCCSD CKTTKTPMWR GGPTGPKVSS STFNHCILDF  60
SLCNACGIRF RKQRRSELLA IRIIHSHKVL DSKKIKPKSS SLSSSHGGVA VKKQRYLKEI  120
EQAALCLLLL SCSSDLA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g054160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026883e-44CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P163e-44AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493945.19e-60PREDICTED: GATA transcription factor 23-like
SwissprotQ8LC591e-48GAT23_ARATH; GATA transcription factor 23
TrEMBLR0FJX98e-52R0FJX9_9BRAS; Uncharacterized protein
STRINGXP_010493945.14e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-45GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]