PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g054160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 138aa MW: 15261.8 Da PI: 10.1077 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 28.5 | 2.2e-09 | 28 | 47 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+ttkTp+WR gp g+k Csa20g054160.1 28 CSDCKTTKTPMWRGGPTGPK 47 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.025 | 22 | 51 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.2E-11 | 22 | 91 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-8 | 22 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.6E-11 | 25 | 75 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.2E-7 | 28 | 47 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.82E-8 | 28 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MDPRQLRSCS SSYVSTRIEE EKVITRCCSD CKTTKTPMWR GGPTGPKVSS STFNHCILDF 60 SLCNACGIRF RKQRRSELLA IRIIHSHKVL DSKKIKPKSS SLSSSHGGVA VKKQRYLKEI 120 EQAALCLLLL SCSSDLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g054160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 3e-44 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F2P16 | 3e-44 | AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493945.1 | 9e-60 | PREDICTED: GATA transcription factor 23-like | ||||
Swissprot | Q8LC59 | 1e-48 | GAT23_ARATH; GATA transcription factor 23 | ||||
TrEMBL | R0FJX9 | 8e-52 | R0FJX9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010493945.1 | 4e-59 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14484 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 4e-45 | GATA transcription factor 23 |
Publications ? help Back to Top | |||
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