PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g053990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 141aa    MW: 15750.5 Da    PI: 8.4809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g053990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-085779527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    lC+ f  + +C++G++C++ H++
  Csa20g053990.1 57 LCNSFITSNFCPFGNSCRYVHPR 79
                    8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.81E-12447No hitNo description
PfamPF062202.0E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.0095280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65581IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-65779IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-45779IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSDLNPQVS NFATKGLCNS  60
FITSNFCPFG NSCRYVHPRS NTGSTGFTSN TQPHPDMLNQ HIQGSDFFSG RPGTGWFDLP  120
PSLKPPPEQG YPQLPSIDWG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g053990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007325e-46AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026885e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P165e-46AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493925.11e-99PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ0JP117e-32C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLR0FCD42e-85R0FCD4_9BRAS; Uncharacterized protein
STRINGXP_010493925.14e-99(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-79C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]