PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g049150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 466aa    MW: 51833.8 Da    PI: 7.7365
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g049150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-15101140241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+CnCk+skClk+YCeCfa+g++C+ +C+C +C+N+ +
  Csa20g049150.1 101 QQKRCNCKNSKCLKLYCECFASGSYCNGSCNCLNCHNNLD 140
                     79***********************************965 PP
2TCR51.81.6e-16186225140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeC++a++ Cse+C+C+dCkN e
  Csa20g049150.1 186 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNFE 225
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-15100141IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.408101226IPR005172CRC domain
PfamPF036386.6E-12102138IPR005172CRC domain
SMARTSM011145.3E-19186227IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12189224IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEEDSSFNQN PPQSDFSISA KIDSFQKSLE QPPPPTSPVK SSQESATEVT PPQKPPLHRF  60
VHNQLHMNQS GGNCRVSDQD PLTTSRVQTE LESIDNTPNK QQKRCNCKNS KCLKLYCECF  120
ASGSYCNGSC NCLNCHNNLD KENSRQEAVT TILERNPDAF KPKIAGSPHG IKDLQENARK  180
MLLLGKHSKG CHCKKSGCLK KYCECYQANV LCSENCRCQD CKNFEGSEER NALLHGPQVS  240
ENYIQQTTNA AVNRAIDMSG YLNPPESRKR KSKDALHSLV VQNQRANHVV RNGDTSLFSL  300
PNDKAVSGYT TCAYRSSLSN IIQPHHVREL CSLLVSKSVD VANKLSGAKC ETNKRKDPSR  360
DPAQRGANVI NDSPDCVLDT NRIEEKPLSP ATRALMCDEE HEIGSEKDTF ARVKTSQEKE  420
DTDTSSEVYL EQERQILSSF RDYLIQLSNR GSLNGRNTKA DTNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-32942353132Protein lin-54 homolog
5fd3_B7e-32942353132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g049150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-101AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-101CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493834.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLR0HA940.0R0HA94_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010493834.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein