PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g047450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 188aa    MW: 21119.9 Da    PI: 7.03
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g047450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Csa20g047450.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-34666No hitNo description
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-20766IPR016177DNA-binding domain
PfamPF008476.8E-11756IPR001471AP2/ERF domain
SMARTSM003808.1E-41770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-34764IPR001471AP2/ERF domain
PRINTSPR003679.8E-11819IPR001471AP2/ERF domain
PRINTSPR003679.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAV PTSSSKLLSA TLTAKLHKCY MASLQMTKQT QTQTARLRPA ETDGDINCVM  120
ANVNQFNRGG GGGGVMTETT EIKWEDGNTN MEQNFSPLEE DHIEQMIEEL LHYGSIELCS  180
VLPTQTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17669468ATERF1
3gcc_A6e-17669468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g047450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456591e-103AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
GenBankAY0596641e-103AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493767.11e-141PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-106ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLR0HCM41e-110R0HCM4_9BRAS; Uncharacterized protein
STRINGXP_010493767.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-84ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]