PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g046110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 359aa    MW: 38719 Da    PI: 5.8908
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g046110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  + l+C+ +  +lC +C ++ H  
  Csa20g046110.1  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                    58***************************9954 PP
2zf-B_box27.46.9e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Csa20g046110.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT706e-24291334144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Csa20g046110.1 291 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 334
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006433.1E-5443IPR000315B-box-type zinc finger
CDDcd000211.18E-8548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.4E-74691IPR000315B-box-type zinc finger
CDDcd000211.39E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767291333IPR010402CCT domain
PfamPF062037.0E-18291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYFSDL  120
GGNASREEEE EEAASWLLLP NPKTTTTTTT TVAAKEVPGD SPEMNTGQQY LFSDPDPYLD  180
LDYGSVDPKV ESLEQNSSGT DGVVPVENRT VRVSTVNENC FELDFTGGSK GFAYSGGYNC  240
ISHSVSSSSM EVGVVPDGGS VADVSYPYGG SATSGADPGS QRAVPLTSAE REARVMRYRE  300
KRKNRKFEKT IRYASRKAYA EMRPRIKGRF AKRTDTSESN DVVAHGGIFS GFGLVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g046110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937570.0AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493742.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A178UN260.0A0A178UN26_ARATH; COL4
STRINGXP_010493742.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4