PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g041160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 379aa    MW: 41372.9 Da    PI: 5.2923
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g041160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  Csa20g041160.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box19.22.5e-064690440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40
                     +C++++ ++++  C d ++ lC++C   +H g        H+++
  Csa20g041160.1 46 LICERCNAQPASVRCSDERVSLCQNCDWVGHDGtsctttshHKRQ 90
                    68*****************************77888888877765 PP
3CCT59.51.2e-20321364144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Csa20g041160.1 321 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 364
                     99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
CDDcd000211.42E-7447No hitNo description
PROSITE profilePS501199.2864392IPR000315B-box-type zinc finger
CDDcd000218.21E-64792No hitNo description
PROSITE profilePS5101715.1321363IPR010402CCT domain
PfamPF062032.5E-15321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWVGHDGTS CTTTSHHKRQ TINCYSGCPS SAELSSIWSF CLDLNMSSAG  120
ESACEQGMGL MTIDEGPGDK SGVQNVSVDQ SGTSSAAQGM DRSSVPENTS LAKELGVCED  180
DFNGNLIMDE VDMALENYEE LFGAAFNSSR YLFEHGGIGS LFDKDEAPEG SIEGNAMQQP  240
AISNNASADD SFMTCRTEPI ICYSSKPAHS NISFSGVTGE SNAGDFQDCG ASSMKQLSNE  300
PQPWCPPTSQ DIIASSHATT RNNAVMRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF  360
VKSGEAYDYD PMSPARSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g041160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399570.0AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426070.0AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493639.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
RefseqXP_010493640.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
RefseqXP_019097594.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLR0GR910.0R0GR91_9BRAS; Uncharacterized protein
STRINGXP_010493639.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]