PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25990.3 Da    PI: 9.8839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-162466849
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49
                     +++ f+ R +++ KKA+ELS+LCd++v+vi++  +g+l  ++
  Csa20g038530.1 24 PKTTNFALREKTMYKKASELSILCDVDVCVIYYNRDGELVgTW 66
                    57899********************************985356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-4468IPR002100Transcription factor, MADS-box
CDDcd002669.33E-191894No hitNo description
SuperFamilySSF554559.52E-1620102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.752562IPR002100Transcription factor, MADS-box
PfamPF003191.9E-122562IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSTKDKTRRS LLSVRNRKSF KKQPKTTNFA LREKTMYKKA SELSILCDVD VCVIYYNRDG  60
ELVGTWPEDQ SKVRDMAERY SKLNDSERRK KSTNLSQFLN KKTGLKDKKT SLDINDKRFS  120
EKLLEMEASL ESNIRVLQDQ HLRVLQNQTE QPDQNPLVSS AGFFTTLMSG GASKTEQYLS  180
TPSSTQQHQR KVSFFLYNHD NGSFCQLPDS SVSTFDPSTK LHYEF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495401.11e-167PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N22e-62AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1199e-80R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495401.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.13e-66AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]