PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 423aa    MW: 47601.9 Da    PI: 6.5037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.3e-16162208449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49 
                     ++ s++++ ++ R ++++KKA+ELS+LCd+e +vi++  +g l  ++
  Csa20g038420.1 162 SSVSKKTTNLASREKTMFKKASELSILCDVELCVIYYNRDGDLVgTW 208
                     67789999*********************************974255 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-5150210IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.54161204IPR002100Transcription factor, MADS-box
CDDcd002661.69E-18165236No hitNo description
SuperFamilySSF554551.06E-13166245IPR002100Transcription factor, MADS-box
PfamPF003195.0E-11167204IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MIKYAFRVCT SQLVRQLLRC LCNQPHYLVT ADDVDLYLAV EVQPLDDRNR KWLLVPLDPV  60
MQSNIEKTFH TGHASYNVSL ATGYLDIWQA ATLSIEREGY SIQCSSNCLT NCGKVLSFYY  120
IKQTKQRTTM VSSSSSSSSM LASSSSSMLS VRNRKCFKPS LSSVSKKTTN LASREKTMFK  180
KASELSILCD VELCVIYYNR DGDLVGTWPE DQSKVRDMAE RYSKLNDSER RKKSTNLSQF  240
LNKKTDKMTS LDINDKRFSE KLLEMEASLE SNLRVFQDNL LRVLQNQTEQ PDQNPLVSSA  300
GFFTTDPSLM SGGVSETEQN LSTPSLTQQH QSKVSLFLYN HDNGSFCQLP DSVSTFDPSM  360
SSASLGAQGS FLTSNNFDLP IPMVFPPLMQ TQTPPLVHFD DQFADWNQTP YFADPMMFSS  420
CV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495396.20.0PREDICTED: agamous-like MADS-box protein AGL53
RefseqXP_010495400.20.0PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N21e-90AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1191e-115R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495396.10.0(Camelina sativa)
STRINGXP_010495400.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.15e-91AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]