PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g038340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26905.6 Da PI: 9.4656 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.7 | 9.5e-11 | 6 | 34 | 7 | 35 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaev 35 s++++ + R ++++KKA+ELS+LCd+ev Csa20g038340.1 6 SKKTTNLPLREQTMFKKASELSILCDIEV 34 567788888*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.662 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-8 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-6 | 15 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFPSVSKKTT NLPLREQTMF KKASELSILC DIEVRDRELV KTWPEYQSKV RDMAERFSKL 60 NNRERRKKST NLSLFLNKKT LKNKKTSFNI KDNKFSEKVL EMEASLESAL RVLQDKLLRL 120 QNQTEPDQNP VVSSAGFFTT DPSLMSGTSK VSVFLYNHDN GSFCQLPHSV SSFDPSMSTA 180 SLGAQGLCLR SNDSDLPMVF PPQIQTQTPP LVHFDQFAGW NQTPSSFADP VMFSSYN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g038340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227520 | 2e-31 | AK227520.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-I07. | |||
GenBank | BT004581 | 2e-31 | BT004581.1 Arabidopsis thaliana At5g26870 gene, complete cds. | |||
GenBank | CP002688 | 2e-31 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F2P16 | 2e-31 | AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455071.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9H9 | 1e-78 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0H119 | 1e-106 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010455071.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26950.1 | 1e-72 | AGAMOUS-like 93 |
Publications ? help Back to Top | |||
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