PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g037900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 30372.8 Da PI: 8.449 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.8e-05 | 193 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C+ +F ++ + H ++ H Csa20g037900.1 193 YTCPKCNNVFETSQKFAAHVSSiH 216 9******************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.515 | 193 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 195 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MFATSVYTNH HGLYSSSNVS PSSFDFNNSH VAYEMRENMV STFGMPFITR VPNNAHLSQI 60 SVTQTTINRY YNIIPTNNLS TVQNEYHRAI NPNIFNSSFY PPNYWYKQHN ILNPTPLNTV 120 FPHQTFVYPT QLDIFSCSPK CYHDQLVPHH QPLKKRYRST TYFEENLGSV NSEENCEYDG 180 RTHSLPYKKY GPYTCPKCNN VFETSQKFAA HVSSIHYKNE TINERFKRDN ARNNKRLCKA 240 NQMIHEECRN IQPEEWRE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g037900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019097810.1 | 0.0 | PREDICTED: uncharacterized protein LOC104772482 | ||||
TrEMBL | R0GZ56 | 1e-112 | R0GZ56_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424242.1 | 1e-139 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22990.1 | 1e-103 | C2H2-like zinc finger protein |