PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g036010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29293.2 Da PI: 5.9776 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.6 | 1.4e-41 | 14 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk................kvkaeekewyfFskrdkkyatgkrknratk 79 + GfrF Pt+eelv +yL++++eg++ +++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t Csa20g036010.1 14 TTGFRFYPTEEELVAFYLRNQLEGRSdVSVHRVIPVLDVFEVEPSHLPMlvyyiylhcladmsgeRCRGDVEQWFFFVPRQEREARGGRPSRTTG 108 68**********************997788889***************668999999999887776666888*********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa20g036010.1 109 SGYWKATGSPGPVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 157 ***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-42 | 11 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.227 | 13 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-23 | 15 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MCSLYHTEMA DEVTTGFRFY PTEEELVAFY LRNQLEGRSD VSVHRVIPVL DVFEVEPSHL 60 PMLVYYIYLH CLADMSGERC RGDVEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP 120 VFSKDNRMIG VKKTMVFYTG KAPTGRKTKW KMNEYKAVDE TVNASTAPQV RHEFSLCRVY 180 VTTGSSRAFD RRPPVGVLPP ERMLTSEVAV AGTSSFRVES SPETSISGGE QHVDLSMNVD 240 LVEGLTEPIW EWEQLSWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-30 | 16 | 187 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-30 | 16 | 187 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-30 | 16 | 187 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-30 | 16 | 187 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-30 | 16 | 187 | 23 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-30 | 16 | 187 | 20 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-30 | 16 | 187 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g036010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175806 | 1e-164 | AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20. | |||
GenBank | AY086944 | 1e-164 | AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493320.1 | 1e-179 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-144 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R0FHF5 | 1e-148 | R0FHF5_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010493320.1 | 1e-178 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-135 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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