PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g033270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23093.1 Da    PI: 9.6532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g033270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-162465949
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49
                    +++ ++ R +++ KKA+ELS+LCd+ev+vi++  +g+l  ++
  Csa20g033270.1 24 KTTNLASREQTMYKKASELSILCDVEVCVIYYNRDGELVgTW 65
                    678899******************************985356 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-4667IPR002100Transcription factor, MADS-box
CDDcd002661.38E-171793No hitNo description
SuperFamilySSF554551.83E-1421102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.4842461IPR002100Transcription factor, MADS-box
PfamPF003191.2E-113161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLTKDKTRRL LSVRNPKSFK KQPKTTNLAS REQTMYKKAS ELSILCDVEV CVIYYNRDGE  60
LVGTWPEDRS KVRDMAERYS KLNDSERRKK STNLSLFLNK KTDKKTSLDI NDKRFSEKLL  120
EMEASLESNI RVLQDQSSGV TEPADRTPRS EPFGVFRRLL HNIDERWCVK NRARPIDAFI  180
DSTTSHGDDA DTNPTSTCPL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g033270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495345.21e-121PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N22e-44AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1193e-54R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495345.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.18e-51AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]