PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g033270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23093.1 Da PI: 9.6532 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.9 | 2e-16 | 24 | 65 | 9 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49 +++ ++ R +++ KKA+ELS+LCd+ev+vi++ +g+l ++ Csa20g033270.1 24 KTTNLASREQTMYKKASELSILCDVEVCVIYYNRDGELVgTW 65 678899******************************985356 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-4 | 6 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.38E-17 | 17 | 93 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-14 | 21 | 102 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.484 | 24 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-11 | 31 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLTKDKTRRL LSVRNPKSFK KQPKTTNLAS REQTMYKKAS ELSILCDVEV CVIYYNRDGE 60 LVGTWPEDRS KVRDMAERYS KLNDSERRKK STNLSLFLNK KTDKKTSLDI NDKRFSEKLL 120 EMEASLESNI RVLQDQSSGV TEPADRTPRS EPFGVFRRLL HNIDERWCVK NRARPIDAFI 180 DSTTSHGDDA DTNPTSTCPL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g033270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495345.2 | 1e-121 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 2e-44 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 3e-54 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495345.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.1 | 8e-51 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
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