PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g027400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 795aa MW: 91124.3 Da PI: 7.1424

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g027400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	3e-20	57	131	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Csa20g027400.1 57 DYYNAYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131 69************************************876..............589*************************98 PP
2	FAR1	67.6	3.1e-21	229	305	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnH+l p Csa20g027400.1 229 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 305 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-15	57	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	229	305	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-24	406	497	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	680	716	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	688	713	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-8	691	718	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MENVDTELNG YNNMVAKAYP VRVLHHNNGV SEDEEGGSGG VEPYVGLEFD TAEEARDYYN 60 AYAIRTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL 120 DQIQKEHNHE LGGETQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DREPRSCPGG 180 GFKRFKGGGG GEGGEVSDDH HHQMQQSKAV TGTEPYAGLE FGSANEACQF YQAYAEVVGF 240 RVRIGQLFRS KVDGSITSRR FVCSREGFQH PSRMGCGAYM RIKRQDSGGW IVDRLNKDHN 300 HDLEPGKKND SGMKKITDDG TGGLDSVDLI ELNDFGNNNN HIKKTRENRI GKEWYPLLLD 360 YFQSRQTEDM GFFYAVELDV SNGSCMSIFW ADSRARFACS QFGDTVVFDT SYRKGNYAVP 420 FATVIGFNHH RQPVLLGCAM VADESKEAFL WLFQTWLRAM PGRRPRSIVA DQDLPIQQAL 480 VQVFPGAHHR YSAWQVREKE QENLRPFPSE FKYEYEKCIY QTQTTVEFDS VWSALINKYG 540 LRDDIWLREI YEQRENWVPA YLRASFFAGI PINGTTESFF GASLDALTPL REFISRYEQA 600 LEQRREEERK EDFNSYNLQP FLQTKEPVEE QCRRLYTLTV FRIFQSELVQ SYNYLCLKTY 660 EEGAISRFLV RKCGNESEKH AVTFSASNLN SSCSCQMFEH EGLLCRHILK VFNLLDIREL 720 PSRYILHRWT KNAEFGFVRD MESGVSAQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY 780 EIMREGGKKL CWQR*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MENVDTELNG YNNMVAKAYP VRVLHHNNGV SEDEEGGSGG VEPYVGLEFD TAEEARDYYN  60
AYAIRTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL  120
DQIQKEHNHE LGGETQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DREPRSCPGG  180
GFKRFKGGGG GEGGEVSDDH HHQMQQSKAV TGTEPYAGLE FGSANEACQF YQAYAEVVGF  240
RVRIGQLFRS KVDGSITSRR FVCSREGFQH PSRMGCGAYM RIKRQDSGGW IVDRLNKDHN  300
HDLEPGKKND SGMKKITDDG TGGLDSVDLI ELNDFGNNNN HIKKTRENRI GKEWYPLLLD  360
YFQSRQTEDM GFFYAVELDV SNGSCMSIFW ADSRARFACS QFGDTVVFDT SYRKGNYAVP  420
FATVIGFNHH RQPVLLGCAM VADESKEAFL WLFQTWLRAM PGRRPRSIVA DQDLPIQQAL  480
VQVFPGAHHR YSAWQVREKE QENLRPFPSE FKYEYEKCIY QTQTTVEFDS VWSALINKYG  540
LRDDIWLREI YEQRENWVPA YLRASFFAGI PINGTTESFF GASLDALTPL REFISRYEQA  600
LEQRREEERK EDFNSYNLQP FLQTKEPVEE QCRRLYTLTV FRIFQSELVQ SYNYLCLKTY  660
EEGAISRFLV RKCGNESEKH AVTFSASNLN SSCSCQMFEH EGLLCRHILK VFNLLDIREL  720
PSRYILHRWT KNAEFGFVRD MESGVSAQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY  780
EIMREGGKKL CWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g027400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068655	0.0	AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010492935.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	R0FBV1	0.0	R0FBV1_9BRAS; Uncharacterized protein
STRING	XP_010492935.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]