PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 135aa    MW: 15503.1 Da    PI: 10.7798
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.52.7e-1613100297
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     F  ++y++++d++++++isws+n nsf++++  +f +k++p+  +   nf+SFv +L   gFk+vk + +         eF +++F  ++ +ll+
  Csa20g026810.1  13 FYVRVYQVVDDPSTDSIISWSSN-NSFLIWNVGKFRRKIMPTCVEFGfNFSSFVSKLRSHGFKRVKGPGQ--------LEFGDEYFVVDQPQLLK 98 
                     8899*****************99.******************888655******************9996........59999999999999988 PP

                     XX CS
    HSF_DNA-bind  96 ki 97 
                      +
  Csa20g026810.1  99 LM 100
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.85E-189100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-219103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-18997IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-1413100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-71336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-76476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVHNCFPRGL SSFYVRVYQV VDDPSTDSII SWSSNNSFLI WNVGKFRRKI MPTCVEFGFN  60
FSSFVSKLRS HGFKRVKGPG QLEFGDEYFV VDQPQLLKLM MVEALRTKRN AKKAKARAKK  120
DRVQVEGLLK HLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495279.12e-96PREDICTED: heat stress transcription factor A-5-like
TrEMBLR0GJE48e-55R0GJE4_9BRAS; Uncharacterized protein
STRINGXP_010495279.18e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.13e-36Winged helix-turn-helix transcription repressor DNA-binding