PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g026260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29502.6 Da PI: 10.0244 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3.1e-13 | 2 | 59 | 37 | 97 |
EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l+ ++g sW+vk+ +k++ y+ +GW++Fv++ngL e++ ++F+++ +++f v ++ Csa20g026260.1 2 VLTVPWGCSWQVKI--SKNPFFhYMEDRGWNQFVNDNGLGENEYLTFTHEANMCF--SVNIY 59 78889*********..99999867777**********************999999..66665 PP | |||||||
2 | B3 | 55 | 1.5e-17 | 177 | 254 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l +pkkfa+ h+ + e+k ++ +++g +sWev++ ++ + +++GW++F+k+ gL++gD+++Fkl++ +e++vkv Csa20g026260.1 177 FLGIPKKFADMHMPN--ETKVFKIHHPRGkKSWEVTY--FVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIE--PTEMCVKVS 254 468*********866..56689999999989******..4444455699*********************986..677788876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.337 | 1 | 62 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.093 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-13 | 1 | 63 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.6E-11 | 1 | 59 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.99E-11 | 1 | 59 | No hit | No description |
SuperFamily | SSF101936 | 6.47E-13 | 2 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 160 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 160 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 163 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.75E-17 | 164 | 255 | No hit | No description |
SMART | SM01019 | 3.7E-18 | 166 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 177 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MVLTVPWGCS WQVKISKNPF FHYMEDRGWN QFVNDNGLGE NEYLTFTHEA NMCFSVNIYE 60 SNGKEMLRPR QSSTITSSSG RNKREERKSI FIDVKKEVET ESCSESGHPV LKTAESTSGR 120 SKQKQELNLR KRETKETTKS KKRKNRKVDT VSNDSEAGTS SRVPEFKITI KKSHLLFLGI 180 PKKFADMHMP NETKVFKIHH PRGKKSWEVT YFVTDVQSRF SAGWSRFAKE LGLEVGDVCT 240 FKLIEPTEMC VKVSKE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 129 | 143 | RKRETKETTKSKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g026260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019098086.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18000-like | ||||
Swissprot | Q9FJG2 | 1e-138 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | R0FIQ9 | 1e-150 | R0FIQ9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495263.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-137 | VERDANDI |
Publications ? help Back to Top | |||
---|---|---|---|
|