PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g026000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 264aa MW: 28972 Da PI: 6.507 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47 | 4.5e-15 | 18 | 78 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Csa20g026000.1 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 78 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.4 | 1.7e-34 | 17 | 80 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Csa20g026000.1 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 80 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-14 | 10 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-8 | 12 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.224 | 14 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-5 | 16 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.0E-13 | 18 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDQEGASQSP STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGAV 60 GDANVFYWFQ NRRSRSRRRQ RQLQAATAAP ATSGGAEDHQ HMTAMTMHQY PYSNSEIDLG 120 FGSCSNSSSA NYFLNGTSSS QVSSFLLGLS SSSGGCESNG MEDLFTMYGH QSDHHHQHSS 180 NAHSMFSPSD GNSNFQYQQG LMTVFINGVP TEVTKGTIDM KATFGEDSVL LHSSGLPLPT 240 DEFGFLMHSL QHGQAYFLVP RQT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g026000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251403 | 0.0 | AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492747.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 1e-138 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | D7LXM9 | 1e-147 | D7LXM9_ARALL; Predicted protein | ||||
STRING | XP_010492747.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-114 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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