PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g024490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 335aa    MW: 37856.3 Da    PI: 5.8432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g024490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
   Csa20g024490.1 14 KGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.42.5e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   Csa20g024490.1  71 SEYEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-19563IPR009057Homeodomain-like
PROSITE profilePS5129412.261961IPR017930Myb domain
SuperFamilySSF466891.5E-2611108IPR009057Homeodomain-like
SMARTSM007172.1E-91363IPR001005SANT/Myb domain
PfamPF002495.8E-121461IPR001005SANT/Myb domain
CDDcd001674.49E-71661No hitNo description
PROSITE profilePS5129426.34162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-2564117IPR009057Homeodomain-like
SMARTSM007172.5E-1466114IPR001005SANT/Myb domain
PfamPF002494.6E-1471111IPR001005SANT/Myb domain
CDDcd001676.68E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTIE EDKKLINFIL TNGHCCWRAL PKLSGLLRCG KSCRLRWINY  60
LRPDLKRGLL SEYEEQMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKLG  120
IDPLTHKPLS EEEASQQAQG RKKSLVPHDD KSPKQDQEDK QTKDKQDQHH TEKDLEKNIM  180
TSASSDGFCI DEVPLLSPHE ILIDISSSQH HHTNDDYVNN INTSKFTSPS SSSSSTSSCV  240
SSVVPGDEFS KFLDEMEINL DLKWLSSDDS SGEHISKDGK FNNTVDTMDL WDINDLNSLD  300
IFLNDDDHDG AFVGNGNGCS RMVLDQDSWT FDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g024490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759900.0AF175990.1 Arabidopsis thaliana putative transcription factor (MYB43) mRNA, complete cds.
GenBankAY5196250.0AY519625.1 Arabidopsis thaliana MYB transcription factor (At5g16600) mRNA, complete cds.
GenBankBT0027620.0BT002762.1 Arabidopsis thaliana clone C105246 unknown protein (At5g16600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492571.10.0PREDICTED: protein ODORANT1-like
TrEMBLR0GVX60.0R0GVX6_9BRAS; Uncharacterized protein
STRINGXP_010492571.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-168myb domain protein 43