PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g023720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 457aa    MW: 51642.7 Da    PI: 4.5285
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g023720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK741.8e-23360409251
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     +k++++ d +++F+lpi+ AA +L+vc+Tv+K+iCR+ G+kRWP+Rkiks
  Csa20g023720.1 360 TKKMTVRDFRMHFHLPIETAADDLDVCPTVIKKICREGGLKRWPYRKIKS 409
                     799**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.086350431IPR003035RWP-RK domain
PfamPF020422.8E-20363409IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAGDDDPKPS ALPKDNADKE DPFINDPLDE FRGFTEEDIQ NVMADFNPTL MDISFTENMP  60
PPSMSTLPLP TDVDQTQLMH ELDLSITDYN INDEFDGMSS FVDDDYSISW DMFDPSNDDP  120
NGNINNDVVP QEIRNDNVGE TTRLEVSTRV FGDVNGPNFE TGGPSTMPPP ISSDRMFVVS  180
DPNYVCPCCT MLREIVHVKE REISNTLIIF GGIGFLCHAL LLTQLLPSDP MEPLPQPQPQ  240
PLRYHLNDLT MEEVKKFIED YCSQREASGL SLMQDTNAAF YQAMSVNSIF NQWPEPLLTL  300
PTCPEVPLPL VSPDEALDVR PAVPLRIGPR EQATTNVRKE RKNRKPMKEK TPLAAQRART  360
KKMTVRDFRM HFHLPIETAA DDLDVCPTVI KKICREGGLK RWPYRKIKSC QTRIELLKKS  420
LCKAKDGEAK ARIEAEIERL QRDIERICSD ALRNAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g023720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492488.10.0PREDICTED: uncharacterized protein LOC104769865
TrEMBLA0A178UGY41e-168A0A178UGY4_ARATH; Uncharacterized protein
TrEMBLA0A1R7T3I31e-169A0A1R7T3I3_ARATH; RWP-RK domain protein
STRINGXP_010492488.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.11e-11Nin-like family protein