PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g021700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 430aa    MW: 46502.2 Da    PI: 9.6067
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g021700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.8e-3255110458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     ++YkeClkNhAa++Ggha+DGCgEfmps+  + +++++l+CaACgCHRnFHRre +
  Csa20g021700.1  55 TTYKECLKNHAARIGGHALDGCGEFMPSPAYNsNDPTTLTCAACGCHRNFHRREDD 110
                     78***************************999889******************975 PP
2ZF-HD_dimer25.23.8e-082532674458
     ZF-HD_dimer  44 aACgCHRnFHRreve 58 
                      ACgCHRnFHRre +
  Csa20g021700.1 253 XACGCHRNFHRREDD 267
                     69**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2547108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.3E-2755109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-3156108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.80357108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.03E-19168239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27170238IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-23181237IPR006455Homeodomain, ZF-HD class
PfamPF047701.3E-4254266IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.77E-19326397IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27328396IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-23339395IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHNHLASEA AAVATTYKEC  60
LKNHAARIGG HALDGCGEFM PSPAYNSNDP TTLTCAACGC HRNFHRREDD PLSASAVVPA  120
IEFRPHNRHQ LPPPPPPHPV GIRSPDDDDS ASPPPISSSY MLLALSGGGG GGANSAGPMS  180
RKRFRTKFSQ YQKEKMFEFA ERVGWRMPRA DDVAVKELCR EIGVDKSVFK VWMHNNKISG  240
RGGAKRANGG VFXACGCHRN FHRREDDPLS ASAVVPAIEF RPHNRHQLPP PPPPPHPVGI  300
RSPDDDDSAS PPPISSSYML LALSGGGGGG ANSAGPMSRK RFRTKFSQYQ KEKMFEFAER  360
VGWRMPRADD VAVKELCREI GVDKSVFKVW MHNNKISGRG GAKRANGGVV SGGDSRESVV  420
PTNGSFSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211803981676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g021700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankBT0121950.0BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420179.11e-160PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-150ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A178UMR31e-147A0A178UMR3_ARATH; ZHD8
STRINGXP_010420179.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-132homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]