PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g021030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37671.3 Da PI: 6.8493 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104 | 2e-32 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a.....t 78 lp+G++F+Ptdee++ e+L++k+ + + + v ++v+i++++P++Lp v+++ ++++fF k++++y++g+rk+r + t Csa20g021030.1 55 LPKGVKFEPTDEEVI-EHLEAKCGIDGlkphllI---QdficsVTQDVGINYTHPQNLP-GVNKDGTSVFFFNKTAHAYQNGQRKRRrVtptslT 144 799************.99****877775566552...03444478999***********.6778899*******************954565552 PP NAM 79 k.sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + s +W++tg++k+v+ +g ++g+kk++v+yk + k+ek++Wv+h+y+l Csa20g021030.1 145 DeSVRWHKTGQTKPVII-NGVQKGCKKIMVLYKSarKGLKPEKSNWVLHQYHL 196 25888************.999***********6422556778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-36 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.057 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-13 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MERAWIVDGP WIARNIKNAP VSSALHIKEC GASINCPNCS YRVDNSNVLA PWPGLPKGVK 60 FEPTDEEVIE HLEAKCGIDG LKPHLLIQDF ICSVTQDVGI NYTHPQNLPG VNKDGTSVFF 120 FNKTAHAYQN GQRKRRRVTP TSLTDESVRW HKTGQTKPVI INGVQKGCKK IMVLYKSARK 180 GLKPEKSNWV LHQYHLGTEE GEIGEFVVSK ITYQQQKQTE KTIDESEGNG VRGGPSTPKT 240 TTPTQARPVV SVDEDEITYE SFVEGLENIQ EPSFGSTSDR RAQVAGNVSV TDDNLVSKKI 300 EALSSLVKKN PNHHGNVDIG SGNFSVSELE NAELGTLPDL LS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 136 | RKRRR |
2 | 133 | 137 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g021030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163792 | 1e-162 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). | |||
GenBank | AL163817 | 1e-162 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 1e-162 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019097355.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 5e-73 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1P8BAI8 | 0.0 | A0A1P8BAI8_ARATH; NAC domain containing protein 85 | ||||
STRING | XP_010453573.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 0.0 | NAC domain containing protein 85 |