PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g017970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 318aa MW: 33455.7 Da PI: 8.7401

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g017970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.9	7.4e-66	103	270	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....kskkqsalsstkl 91 +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + a+ +a +s +++ +k++r ++++q+a+s+t++ Csa20g017970.1 103 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPSGANPTAGSSLsTSSGTKKPRIVgsqqQQQQQQATSHTST 197 57999**********************************************999999888887757778888887666534555555566665 PP DUF702 92 ssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s++ +++++etss +P +++++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle Csa20g017970.1 198 SNT-PPRSFETSSsrqdgggsreaWPGQIRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 270 554.66788888789******************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.6E-59	106	269	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-26	108	150	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-30	220	268	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGMVGLRDVF LVAPAYHHHQ NAGVISGPEA AALGVGVVPL LTAGPPQQQN VEDTDINFLG 60 NNRRWQNNNN NNHETQYLHF KSTSNQTAVG TSSNNNSGSG SGASGTATCQ DCGNQAKKEC 120 KQRRCRTCCK SRGFDCSTHV KSTWVSAARR RERQVMPSGA NPTAGSSLST SSGTKKPRIV 180 GSQQQQQQQQ ATSHTSTSNT PPRSFETSSS RQDGGGSREA WPGQIRAPAV FKCVRVTAVE 240 DGDDEYAYQA VVKIGGHVFK GFLYDQGLEP KEGFPNMSDL HLGGAANNHN GVSASAPILD 300 PPNVYGGGGG SGGGFYG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g017970.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT020614	0.0	BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491993.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-163	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	R0HF13	1e-180	R0HF13_9BRAS; Uncharacterized protein
STRING	XP_010491992.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-160	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]