PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g016470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 390aa    MW: 43922.7 Da    PI: 6.367
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g016470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073293612254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa20g016470.1 329 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 361
                     69*****************************87 PP
2ELK292.5e-10282303122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Csa20g016470.1 282 ELKHELKQGYKEKIVDIREEIL 303
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-18117161IPR005540KNOX1
PfamPF037901.5E-16120160IPR005540KNOX1
SMARTSM012562.6E-28173228IPR005541KNOX2
PfamPF037918.5E-21177227IPR005541KNOX2
PfamPF037898.9E-7282303IPR005539ELK domain
SMARTSM011886.1E-4282303IPR005539ELK domain
PROSITE profilePS512139.969282302IPR005539ELK domain
PROSITE profilePS5007111.758302365IPR001356Homeobox domain
SuperFamilySSF466895.13E-16304368IPR009057Homeodomain-like
SMARTSM003895.2E-11304369IPR001356Homeobox domain
CDDcd000865.16E-11305366No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25309366IPR009057Homeodomain-like
PfamPF059201.1E-17322361IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAFHNNHFNH FTDQQQQQQH QPPPPPPPPQ QHFHESAPPN WLLRSDNNFL NLQTAAATSS  60
DSPSSAAANQ WLSRSSSFLQ RANNNATGSG DVVEDVTTGG EESMIGEKKE AERWQNAKHK  120
AEVLSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ NVVAKYSTLD TAQGLLPGDD  180
KELDHFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSFTGVS PGEGTGATMS  240
EDEDEQVESD AHLFDGSLDG LGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE  300
EILRKRRAGK LPGDTTSVLK SWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK  360
RNWHSNPSSS TVSKNKRRSN AGENSGRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13305369872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g016470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491801.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLR0HAZ40.0R0HAZ4_9BRAS; Uncharacterized protein
STRINGXP_010491801.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]