PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g015380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 279aa MW: 32180.1 Da PI: 4.2965

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g015380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	90.2	4.8e-28	26	100	1	81
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 ++lk+rmwkd++l+++lk++k+++ + ++ + ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pek+ Csa20g015380.1 26 DDLKRRMWKDRNLMEKLKQQKRHNN---DI-VSLT--THRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKD 100 79******************964...33.3333..4899************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.1E-26	26	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MVEVEELEAL SPTEDEEEEE EEISYDDLKR RMWKDRNLME KLKQQKRHNN DIVSLTTHRA 60 EASRRKKMAR SQDSVLKYMM KIMEVCKAKG FVYGIVPEKD LKISDDQDQE SSGSKRKGEF 120 MEPSMSVYTC QNSSCPKSDV SFGFGDKNSR TGHEIQCLYG STQEPSQSMG VTTSTFETAP 180 SIVTNTTSED DYSEKSSAMD KRSDDDHSNN VNWMDYFWSE RMQNELHYSR RVEDDDNDGT 240 GTDLNQFTES DQSDNVNQST FSVWDMGCED KDIYMFDY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g015380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491666.1	1e-119	PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9LX16	2e-89	EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBL	A0A3N6QTY9	1e-134	A0A3N6QTY9_BRACR; Uncharacterized protein
STRING	XP_010491666.1	1e-119	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16143	4	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10120.1	1e-84	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS Seed-specific expression of seven Arabidopsis promoters. Gene, 2014. 553(1): p. 17-23 [PMID:25261846]