PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g012960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 271aa    MW: 30618.3 Da    PI: 10.4923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g012960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-175821697
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      +p +fa+++  ++  + t++++ ++g +Wevk+  +k+++  ++ ++GW++Fv++n L  ++f+ F+++++++f   v + 
  Csa20g012960.1  5 RAIPHDFARSFPDDELLG-TMKITVPWGSTWEVKI--SKNPRFyFMEKSGWEKFVRDNALGRNEFLCFTHKEEMDF--SVNIM 82
                    579********8786555.****************..******555569********************9998999..66655 PP
2B3382.9e-121912601587
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      l lp++ a+ ++ +  +s ++++ +++g +sW+v +    +++++++++GW++ +k+  +  gD++ F+l++ 
  Csa20g012960.1 191 SLALPRSAANVYM-PRVKS-MVKIHHPDGkKSWSVVY--LVTRRGHLFSGGWRGLCKEYPVAFGDTCKFTLIKP 260
                     4789999997774.33344.8*******999******..999999*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.619185IPR003340B3 DNA binding domain
SMARTSM010193.6E-11285IPR003340B3 DNA binding domain
PfamPF023621.6E-14482IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-16586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-14690IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-14781No hitNo description
SuperFamilySSF1019361.14E-16173267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.756177270IPR003340B3 DNA binding domain
SMARTSM010192.1E-14180270IPR003340B3 DNA binding domain
CDDcd100171.05E-8180259No hitNo description
Gene3DG3DSA:2.40.330.102.7E-12181267IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-10191260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNQKRAIPHD FARSFPDDEL LGTMKITVPW GSTWEVKISK NPRFYFMEKS GWEKFVRDNA  60
LGRNEFLCFT HKEEMDFSVN IMKQTGKEMV QPPKPRDFLA SSSRVKTEQG VKTEEVVVSS  120
ELSARVPRTA AGSSGGGRYK RKLNFEEKKA EEPHNTKRTE RAFSIRRDHA GASSSSVAGF  180
EIVISKTYLI SLALPRSAAN VYMPRVKSMV KIHHPDGKKS WSVVYLVTRR GHLFSGGWRG  240
LCKEYPVAFG DTCKFTLIKP LELLLVVTKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g012960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491618.10.0PREDICTED: B3 domain-containing protein REM23-like
RefseqXP_010491619.10.0PREDICTED: B3 domain-containing protein REM23-like
SwissprotQ9LXE11e-116REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG331e-144R0FG33_9BRAS; Uncharacterized protein
STRINGXP_010491618.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]