PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g012560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 1042aa    MW: 117238 Da    PI: 5.9293
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g012560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.42.9e-58221392118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwl++ ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+e n++fq
  Csa20g012560.1  22 MSEaRHRWLRPAEICEILQNHHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEGNENFQ 116
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le++l +iv+vhylevk
  Csa20g012560.1 117 RRCYWMLEQDLMHIVFVHYLEVK 139
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.83518144IPR005559CG-1 DNA-binding domain
SMARTSM010767.5E-8521139IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-5124138IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.97E-14444530IPR014756Immunoglobulin E-set
PfamPF018332.5E-4444519IPR002909IPT domain
PROSITE profilePS5029718.988628739IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-6628703IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-17628740IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-18629739IPR020683Ankyrin repeat-containing domain
CDDcd002043.03E-13640730No hitNo description
SMARTSM002482900645674IPR002110Ankyrin repeat
PROSITE profilePS500888.63645677IPR002110Ankyrin repeat
PROSITE profilePS5008810.392678710IPR002110Ankyrin repeat
SMARTSM002480.0097678707IPR002110Ankyrin repeat
SMARTSM000150.51854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657855884IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.46E-7855904IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0025857875IPR000048IQ motif, EF-hand binding site
SMARTSM000150.047877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359878902IPR000048IQ motif, EF-hand binding site
PfamPF006120.0031880899IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MVDRRSFGFT SPSPRLDMEQ LMSEARHRWL RPAEICEILQ NHHKFHIASE SPTRPASGSL  60
FLFDRKVLRY FRKDGHNWRK KKDGKTIKEA HEKLKVGSVD VLHCYYAHGE GNENFQRRCY  120
WMLEQDLMHI VFVHYLEVKG NRTSQGMKEN NSNSVNGTSS VNIDSTASPT STLSSLCEDA  180
DSAPPYISFG AGDSHQARSV LRASPELQTG NCYGWTPPTG MHNVSQVHGN RVRESDSQRS  240
VDVRAWDAVE NSLTRHHDQP YCNDLLTQMQ PSITDSMLVD ENTDKGRRLM AEPIRNPLQM  300
QSNWQIPVQD DLLLPKGQED LFSHSGMTDD IDLALFELSA EDNFETFASL LGSENQQPFG  360
NSYQAPPSIM ESEYIPVKKS LLRNEDSLKK VDSFSRWAIK ELAEMEDLQM QSSREDIAWT  420
TVECETAAAG ISLSPSLSED QRFTIVDFWP KCANTDAEVE VIVIGTFLLS PQEVTKYNWS  480
CMFGEVEVPA EILVDGVLCC HAPPHTAGLV PFYVTCSNRF ACSEVREFDF LSGSTQKIDA  540
ADVHGLYTDE AASLQLRFEK LLAHRAFVHG YHVFEDVGEK RRKISNIMLL KEEKEYFLPG  600
TYQRDLTKQE SKGQLLREQL EEKLYIWLIH KVTEEGKGPN MLDEDGQGIL HFVAALGYDW  660
AIKPMLAAGV NINFRDANGW SALHWAAFSG REETVAVLVS LGGDAGALTD PSPELPLGKT  720
AADLAYANGH RGISGFLAES SLTSYLEKLT VDSKENSPAN SFGEKAVQTV SERTAAPMSH  780
GDLPERLSLK DSLTAVRNAT QAADRLHQVF RMQSFERKQL SEFDADDKID ISDELAVSFA  840
ASKTKTPGHN DVPSLSSAAT HIQKKYRGWK KRKEFLLIRQ RIVRIQAHVR GHQVRKQYRT  900
VIWSVGLLEK IILRWRRKGK GLRGFKSSAI AKTVEPEPTV AATSCTKPQE DEYDFLKEGR  960
KQTEERLQKA LTRVKSMVQY PEARDQYRRL LTVVEGFREN EASSSASINN EVGGPVNCDE  1020
DDLIDIDSLL NDDTLMMSFS P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g012560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491567.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLR0FCP00.0R0FCP0_9BRAS; Uncharacterized protein
STRINGXP_010491567.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein