PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g012490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 426aa    MW: 47285.9 Da    PI: 4.4961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g012490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.91.8e-4461611129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............................kvkaeekewyfFskrdk 66 
                     l+pGfrFhPtd elv +yLk+k+ gkkl + ++i++vdiyk+eP dLp                               +k+++ +w+fF++r+k
  Csa20g012490.1   6 LAPGFRFHPTDVELVRYYLKRKILGKKLIV-DAIADVDIYKFEPPDLPGiysdkpscsvtlmfsiisnlgvfvvtdmsYIKGGDLKWHFFCPREK 99 
                     579************************988.89***************5589*******************99998877777888********** PP

             NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kya+g r+nrat+ gyWk+tgk+++vl+ ++e+vg  ktLv++ g++p+ge+tdWvmheyrle
  Csa20g012490.1 100 KYASGVRANRATDCGYWKTTGKERPVLC-NSEVVGKIKTLVYHFGKSPRGERTDWVMHEYRLE 161
                     ****************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-51354IPR003441NAC domain
PROSITE profilePS5100549.3226183IPR003441NAC domain
PfamPF023653.5E-258160IPR003441NAC domain
SuperFamilySSF1019411.96E-5181183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGKTKLAPGF RFHPTDVELV RYYLKRKILG KKLIVDAIAD VDIYKFEPPD LPGIYSDKPS  60
CSVTLMFSII SNLGVFVVTD MSYIKGGDLK WHFFCPREKK YASGVRANRA TDCGYWKTTG  120
KERPVLCNSE VVGKIKTLVY HFGKSPRGER TDWVMHEYRL EDKALTQMNV PQDTYVVCVL  180
FKKDGPGPRN GAQYGAPFRE EDWSDEEERT DVPTTSNATI FHEPSKETSL AVTVADDPNK  240
DCFGGMISES CVSDFLPTTT NTTSKLPDPS DAANATMSVT PLAETLQTPD NNNDDLYAML  300
DLFDDDEEFL GFPNEAIHDP GVSAPVSLEG IFNGLPDLGD MQNNMPRTST YDLIENSELY  360
LELQDLTAPL LPPLTAPLNP QTGNVNDSRS SYLYNQGHFD FSAANDDDPY GFSANMRHGP  420
DSGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-37618315168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g012490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172170.0AK317217.1 Arabidopsis thaliana AT5G09330 mRNA, complete cds, clone: RAFL22-35-P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491550.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_010491551.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_010491552.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0HAY90.0R0HAY9_9BRAS; Uncharacterized protein
STRINGXP_010491550.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.40.0NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]