PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g011700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 331aa    MW: 38202.9 Da    PI: 9.6528
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g011700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25553351
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ++++s +++++++R+++i+KKA+ELSvLC++ev+vi+++++g+l+++++
  Csa20g011700.1  5 SSSSSCNSTSLTNRLKTIFKKAYELSVLCAIEVCVIYYGPDGRLKTWPK 53
                    79999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-4154IPR002100Transcription factor, MADS-box
PfamPF003192.4E-14951IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-161187IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.3251355IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRQASSSSSC NSTSLTNRLK TIFKKAYELS VLCAIEVCVI YYGPDGRLKT WPKEKEKVKD  60
MAMRYKEARK RNKSLNLHEF LEKEKDKDKG NTDLKKKKQR NNVKYPNFDH YSPKQLSQLI  120
QSLERTLSKL QERLRFVEAK KQRNANLVHP NQQPLNPSKF SLYMYNHEDA TFSQLPLSAS  180
QSNQLTNYQN RLMKQEPYSY SHNMCVDNTN FQHPYVSTTQ DYSQLLPVQA SAVNNLGLKN  240
NHLIQKQELY GSHHNMPMIS DIINHNNVLQ HSHLSNTAPH DFSSDFQNIP YGENEMVGNT  300
NFSQYTFSSY DTTTLTSLHT IPNSHGVERG *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g011700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114798e-90AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBankAY1412248e-90AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBankCP0026888e-90CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201336.11e-133AGAMOUS-like 78
SwissprotQ9FLL09e-65AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLQ9FKQ51e-132Q9FKQ5_ARATH; AGAMOUS-like 78
STRINGXP_010495112.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.11e-133AGAMOUS-like 78
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]