PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g010010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 208aa    MW: 23311.8 Da    PI: 4.8187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g010010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16109159255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Csa20g010010.1 109 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFKSDVDAARAYDCAAFKLRG 159
                     7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30108168IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22109168IPR016177DNA-binding domain
PfamPF008478.2E-11109159IPR001471AP2/ERF domain
SMARTSM003801.9E-35109173IPR001471AP2/ERF domain
PROSITE profilePS5103224.236109167IPR001471AP2/ERF domain
CDDcd000185.76E-29109167No hitNo description
PRINTSPR003673.8E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.8E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MATVDESSDF EAVQKHLFED LMVSDGFMGD FDFDASFVSG LWCIEEPQVP KQEPDSPVLD  60
PDSFVKEFLQ VEAKSLPSSP ELNTSSSTYE TDQSVKKAER FEEEAETRHY RGVRRRPWGK  120
FAAEIRDPAK KGSRIWLGTF KSDVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPANSG  180
RKRKRSDVQE ELQRTQSNSS SSSCDAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28105168164ATERF1
3gcc_A2e-28105168164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g010010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507140.0AY350714.1 Olimarabidopsis pumila clone BAC Op37I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491377.11e-151PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-119EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5F21e-128Q6V5F2_9BRAS; AP2 transcription factor
STRINGXP_010491377.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-120ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]