PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g009420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 297aa MW: 33509.5 Da PI: 5.9142 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.5 | 6.1e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l +++ + + +t+ ++++v+r ++fdfl ++v + Csa20g009420.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDQTYEITLHRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.69E-20 | 4 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDQT YEITLHRGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGHSQGH VDVAMDDRSI SKRRKPPGDE 120 LNDSDEDLKK TKVHEMGHAG TSGRGSGRGR GRGRGRSAKT SERELLHHRE MEIDASILVA 180 PPQHTQEEIK MHAPLQQHDT EKKDVDERSY QTKEEPQCPK EGNNDTNSGL GRGFDLNTQS 240 LDVEMKPQVI TASREMKIEE YPCWSIPNMG NIDPVQLANM SKRLDEDEED YDEEES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-20 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 152 | RGSGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g009420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491304.1 | 0.0 | PREDICTED: dr1-associated corepressor homolog | ||||
TrEMBL | R0H7M7 | 1e-147 | R0H7M7_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010491304.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-99 | nuclear factor Y, subunit C11 |