PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g009020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 433aa MW: 48004.1 Da PI: 5.4486 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.6e-18 | 284 | 338 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Csa20g009020.1 284 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 338 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.7e-41 | 284 | 373 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Csa20g009020.1 284 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-TL 373 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 263 | 338 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-18 | 276 | 341 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 280 | 340 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 282 | 344 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-15 | 284 | 338 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-15 | 284 | 341 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 315 | 338 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.2E-26 | 340 | 383 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.8E-11 | 340 | 373 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MELALSLGDN TKKQFPFLEK HSKINNPSAS STSTSDKDLG FCMGLDVAFA GHRSLSSSSS 60 PSVEFVNKKP APRTNNLGGF RVSSSVDPPL QLQLHFPNWL PENGRQEGRI LSGVATVVAE 120 EEDEVEEAVP SMSVSPPNSV TSSFQLDFGI KSYGYERRNN KRDIDDELER SASRASNEDN 180 DDENGSTXVC LICDKKEGPG RQEGRILSGV ATVVAEEEDE VEEAVPSMSV SPPNSVTSSF 240 QLDFGIKSYG YERRNNKRDI DDEVERSASR ASNEDNDDEN GSTRKKLRLS KDQSAFLEDS 300 FKEHSTLNPK QKIALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCESLTEEN 360 RRLQKEVKEL RTLKTSTPFY MQLPATTLTM CPSCERVATS ATQPVTSASQ NLGLATSSLH 420 CPVKPRSAKQ VS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 288 | TRKKLRL |
2 | 332 | 340 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g009020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ431182 | 0.0 | AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene). | |||
GenBank | AK227423 | 0.0 | AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452611.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein HAT14 | ||||
Swissprot | P46665 | 1e-142 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A178U8U2 | 1e-139 | A0A178U8U2_ARATH; HAT14 | ||||
STRING | XP_010452611.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-128 | homeobox from Arabidopsis thaliana |