PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g008810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YA | ||||||||
Protein Properties | Length: 126aa MW: 14073 Da PI: 10.8915 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 67.1 | 4.4e-21 | 1 | 45 | 10 | 58 |
CBFB_NFYA 10 QyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 Qy++I++RR +Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF Csa20g008810.1 1 QYHGIIRRRLSRAKAEK---L-SRCRKPYIHHSRHLHAMRRPRGSGGRF 45 9***************9...6.888***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.7E-17 | 1 | 48 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-18 | 1 | 45 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 26.423 | 1 | 48 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
QYHGIIRRRL SRAKAEKLSR CRKPYIHHSR HLHAMRRPRG SGGRFLNTKK VDATKPSNSQ 60 SSEVFHPESG TMKSSREANM PNLSGSEVTS MDYFLSSSVY TPSGMVMPIK WNAATVDTGC 120 YNLNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g008810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084643 | 1e-113 | AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491217.1 | 4e-90 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
Swissprot | Q8LFU0 | 1e-69 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | R0H8U3 | 6e-78 | R0H8U3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010491217.1 | 2e-89 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-72 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
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