PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28224 Da    PI: 4.8079
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.5e-131248541
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    n+  r  ++ kR++g+ KK +ELS+LCd++++++++ 
  Csa20g008790.1 12 NEKARRLSLEKRLAGLVKKTKELSILCDMRACLVVYD 48
                    7788999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-6159IPR002100Transcription factor, MADS-box
CDDcd002663.00E-18284No hitNo description
SuperFamilySSF554557.59E-15993IPR002100Transcription factor, MADS-box
PfamPF003198.5E-121248IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.761247IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGKRKTPTTW ANEKARRLSL EKRLAGLVKK TKELSILCDM RACLVVYDRE VDHLEVWPAP  60
QTAKSLFDKF YSLTDHERNM KAVDPESFIQ TNIQKLEKKI ADTRKAITEI EMDNLMLELS  120
LGRQLADLSR TEVDKLLSYT GKKIMCLRKE MGSEEQLDIM SVDEASLGDA TLRASNVPSA  180
GWGGNVMETG SMYYFDQWGS ADPEVQEPSD ETHLPTMVTG MDLNMEPAVG DKNLGGTSKG  240
ESSKAGAGAE DHAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097705.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLQ9FG209e-90Q9FG20_ARATH; AGAMOUS-like 96
STRINGXP_010491213.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-94AGAMOUS-like 96