PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g008460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 32532.4 Da PI: 6.8956 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 106.4 | 1.4e-33 | 50 | 163 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k ltpsdv+k++rlv+pk++ae++ ++++e+++ l++ede g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v Csa20g008460.1 50 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgasdtSSSSEKGMLLSFEDEMGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVV 144 99***********************************9999777789************************************************ PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 F++++++ ++l+++++r+ Csa20g008460.1 145 FFQRHRSDIRRLFIGWRRR 163 ***98889999*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-40 | 46 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-30 | 48 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-26 | 49 | 152 | No hit | No description |
PROSITE profile | PS50863 | 13.958 | 50 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-30 | 50 | 163 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-27 | 50 | 164 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSVNHYSTDH HHTLLWQQQQ QQQQHRQTTD TSEATTTATW LNDDLKESLF EKSLTPSDVG 60 KLNRLVIPKQ HAEKYFPLNA VVVSSGASDT SSSSEKGMLL SFEDEMGKSW RFRYSYWNSS 120 QSYVLTKGWS RFVKDKQLDP GDVVFFQRHR SDIRRLFIGW RRRGQGSSSS SAPATNSASS 180 MAAPSYRQVH HASTNYSNPP SHSEYSHYGA AVGTAAEETH STPSSSAVAG GSSRTLRLFG 240 VNLECQMDEN DGDDSVAAAA AVESPDGYYG QNMYYYYSHP HNMNIAFTGE R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-50 | 46 | 163 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-50 | 46 | 163 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g008460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 0.0 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491174.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X1 | ||||
Swissprot | Q9FNI3 | 1e-152 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A178UF66 | 1e-155 | A0A178UF66_ARATH; AP2/B3-like transcriptional factor family protein | ||||
TrEMBL | A0A384L0Y1 | 1e-155 | A0A384L0Y1_ARATH; DPA4 | ||||
TrEMBL | R0GWN8 | 1e-156 | R0GWN8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010491174.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-132 | B3 family protein |