PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g006950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-X1
Protein Properties Length: 484aa    MW: 53488.1 Da    PI: 7.9445
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g006950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05354373119
        zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                     CG H+C + CH+G C + C+
  Csa20g006950.1 354 CGYHRCPERCHRGSCLEtCR 373
                     *****************997 PP
2zf-NF-X119.61.9e-06428452119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkCq++CH GpC pCp
  Csa20g006950.1 428 CGkrlrcrNHKCQSPCHQGPCAPCP 452
                     777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359084148IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.56584149IPR001841Zinc finger, RING-type
SMARTSM004388.1195213IPR000967Zinc finger, NF-X1-type
PfamPF014221.3195212IPR000967Zinc finger, NF-X1-type
CDDcd060083.24E-8237285No hitNo description
SMARTSM004380.0012247266IPR000967Zinc finger, NF-X1-type
PfamPF014220.0047247265IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-6290330No hitNo description
SMARTSM004380.038300319IPR000967Zinc finger, NF-X1-type
PfamPF014220.024300318IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-8344393No hitNo description
SMARTSM004380.066354374IPR000967Zinc finger, NF-X1-type
PfamPF014220.002354373IPR000967Zinc finger, NF-X1-type
CDDcd060082.82E-6397445No hitNo description
SMARTSM004380.33407426IPR000967Zinc finger, NF-X1-type
PfamPF014220.018407425IPR000967Zinc finger, NF-X1-type
CDDcd060082.45E-10424472No hitNo description
PfamPF014223.0E-4428452IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034434453IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAGTATTEFR WKPPPQPTPQ QQTISDSDSD SGSDSENHQH RHNDLSNSIF KAYLDCHSSS  60
SPSSIDLAKI QSFLASSSSG AVSCLICLER IKRTDPTWSC TSSCFAVFHL FCIQSWARQC  120
LDLQAARAVT RPSSSPTETE AVWNCPKCRS SYQKSKIPRR YLCYCGKEED PPADNPWILP  180
HSCGEVCERP LSSNCGHCCL LLCHPGPCAS CPKLVKAKCF CGGVEDVRRC GHKNFSCGDV  240
CERVLDCNVH QCREICHDGE CPPCRERAVY RCCCGKVKEE KDCCERVFRC EASCENMLNC  300
GKHVCERGCH SGECGLCPYQ GKRSCPCGKR FYQGLSCDVV APLCGGTCDK VLGCGYHRCP  360
ERCHRGSCLE TCRIVVTKSC RCGGTKKQVP CHQELACERK CQRVRDCARH ACRRRCCDGE  420
CPPCSEICGK RLRCRNHKCQ SPCHQGPCAP CPIMVTISCA CGETHFEVPC GTETXHLKTD  480
RKA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g006950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286900.0AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090669.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A178UB610.0A0A178UB61_ARATH; NFXL2
STRINGXP_010456410.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors