PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g005950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 217aa    MW: 24482.2 Da    PI: 6.8069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g005950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+ + +a  +++ g   +W++Ia  +   +++ ++k+++
   Csa20g005950.1  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLH--KSAGEVKEHY 47
                     7*******************************7..9********9 PP
2Myb_DNA-binding42.91.1e-13100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
   Csa20g005950.1 100 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.188155IPR017930Myb domain
SMARTSM007171.9E-7253IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-11458IPR009057Homeodomain-like
PfamPF002492.2E-5548IPR001005SANT/Myb domain
CDDcd001672.48E-6651No hitNo description
PROSITE profilePS5129418.26193149IPR017930Myb domain
SuperFamilySSF466892.99E-1695150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1696148IPR006447Myb domain, plants
SMARTSM007177.0E-997147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1099143IPR009057Homeodomain-like
PfamPF002491.7E-11100144IPR001005SANT/Myb domain
CDDcd001672.96E-8100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLHKSA GEVKEHYEAL VHDVFEIDAG  60
RVDVPDYMDD SAAASAGWDS AGQISFGSKH ADSERKRGTP WTENEHKLFL IGLKRYGKGD  120
WRSISRNVVV TRTPTQVASH AQKYFLRQNS VKKERKRSSI HDITTVDTNL AMPGSNMDWT  180
GQHGSPVQAP QQQQIMSEFG QQLTTPGHFE DFGFRM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g005950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0509760.0AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
GenBankAY0883620.0AY088362.1 Arabidopsis thaliana clone 6170 mRNA, complete sequence.
GenBankAY0911770.0AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490996.11e-162PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7LXM51e-148D7LXM5_ARALL; Uncharacterized protein
STRINGXP_010490996.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-144MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]