PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g005540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 24489.3 Da PI: 8.3898 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H Csa20g005540.1 85 YKCGVCDKAFSSYQALGGHKASH 107 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.88E-7 | 84 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-4 | 85 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.951 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.034 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-12 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.88E-7 | 143 | 168 | No hit | No description |
SMART | SM00355 | 110 | 148 | 168 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.9E-7 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MALEALTSPR LASPMPTLFQ DSGVGFHGSK GKRSKRSRSE FDRHSLTEDE YIALCLMLLA 60 RDGDRTHDVN LTSSSPALLP PTPIYKCGVC DKAFSSYQAL GGHKASHRKN FSASQSAGGD 120 ELPTSSSAIT SSDISGGGGG GGSVVKSHVC SICHKSFGQA LGGHKRCHYE GKTGGSSSVS 180 NSEGVGSTSH VSSSHRGFDL NIPLIPEFSM VNGEDEVMSP MPAKKLKHNN SSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g005540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF022658 | 1e-171 | AF022658.1 Arabidopsis thaliana putative c2h2 zinc finger transcription factor mRNA, complete cds. | |||
GenBank | AK118868 | 1e-171 | AK118868.1 Arabidopsis thaliana At5g04340 mRNA for putative C2H2 zinc finger transcription factor, complete cds, clone: RAFL21-19-J24. | |||
GenBank | CP002688 | 1e-171 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010490943.1 | 1e-170 | PREDICTED: zinc finger protein ZAT6-like | ||||
Swissprot | O22533 | 1e-108 | ZAT6_ARATH; Zinc finger protein ZAT6 | ||||
TrEMBL | A0A178UKV2 | 1e-105 | A0A178UKV2_ARATH; ZAT6 | ||||
STRING | XP_010490943.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 7e-84 | zinc finger of Arabidopsis thaliana 6 |