PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g005340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 30026.1 Da PI: 9.4655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.6e-14 | 89 | 138 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 ++ +hn++Er RR+++N + Lr+llP+a +++Kls +++ ++v+YI Csa20g005340.1 89 KKLNHNANERGRRRKLNALYTSLRDLLPPA--DQKRKLSIPMTVARVVKYIP 138 6789*************************6..49999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.96 | 88 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.72E-11 | 88 | 145 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-13 | 88 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-10 | 89 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-9 | 94 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MCALTPIFPI SKQQAWYSPS TMEYPWLQSE VDSFAPTHLQ YLPSVLYPSF TQSDESKNYN 60 INTSLSHSNG TNTISNNDQE EDKGTVLEKK LNHNANERGR RRKLNALYTS LRDLLPPADQ 120 KRKLSIPMTV ARVVKYIPEQ KHELQRLSRR KEELLKRISR KTNQERLRNK ATMDSIDSCS 180 SQQISANWLT DTEIAVQIAT SKYTSISDML LTLQENGLNV ISISSSVSST ARIFYTLHLQ 240 MIGDCKVRLE ELINGMLLGL RQS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g005340.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ519810 | 0.0 | AJ519810.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010490919.1 | 0.0 | PREDICTED: transcription factor bHLH101-like | ||||
Swissprot | Q9FYE6 | 1e-112 | BH101_ARATH; Transcription factor bHLH101 | ||||
TrEMBL | R0HCG7 | 1e-143 | R0HCG7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010490919.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 3e-96 | bHLH family protein |