PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g003950.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24704.7 Da PI: 6.9487

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g003950.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.4	8.7e-17	78	130	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql Le F+++ ++ e++ +L+++lgL+ rq vWFqNrRa++k Csa20g003950.1 78 NKRLTSEQLASLEVSFQEDIRLDSERKLKLSRELGLQPRQTAVWFQNRRARWK 130 5679************************************************9 PP
2	HD-ZIP_I/II	111.4	5.9e-36	76	164	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE sF+e+ +L++erK +l+reLglqprq avWFqnrRAR+k k+lE+ y++L+++yda+ +en++L++ev++Lr+ Csa20g003950.1 76 KKNKRLTSEQLASLEVSFQEDIRLDSERKLKLSRELGLQPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWKENQMLHDEVKKLRA 164 589************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.85E-17	62	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	72	132	IPR001356	Homeobox domain
SMART	SM00389	1.9E-15	75	136	IPR001356	Homeobox domain
CDD	cd00086	5.49E-14	76	133	No hit	No description
Pfam	PF00046	2.6E-14	77	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-17	78	140	IPR009057	Homeodomain-like
Pfam	PF02183	2.3E-7	134	164	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEWSTTSNVQ NERDSFMPPP RVESNWLQSF NYDPSAGNSY THAAVTQTGP VITVPESEKM 60 INTYHCDSSN NNEMIKKNKR LTSEQLASLE VSFQEDIRLD SERKLKLSRE LGLQPRQTAV 120 WFQNRRARWK VKHLEESYDS LRQEYDAVWK ENQMLHDEVK KLRAIILRDQ SLMMNINQIA 180 EGGQTNCIGG YNNSPMIVAS SRWTPISQPP NPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g003950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM214233	1e-140	KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBank	KM214234	1e-140	KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495061.1	1e-159	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-84	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A077B3F2	1e-120	A0A077B3F2_9BRAS; RCO-A
STRING	XP_010495061.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-87	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]