PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g003940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30975.3 Da    PI: 9.5913
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g003940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18114166456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + ++t+ ql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Csa20g003940.1 114 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 166
                     45699***********************************************9 PP
2HD-ZIP_I/II115.82.5e-37113203292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+
  Csa20g003940.1 113 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRAILR 203
                     9**************************************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-18103170IPR009057Homeodomain-like
PROSITE profilePS5007116.487108168IPR001356Homeobox domain
SMARTSM003894.5E-17110172IPR001356Homeobox domain
CDDcd000866.87E-15113169No hitNo description
PfamPF000465.4E-16114166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-19115175IPR009057Homeodomain-like
PRINTSPR000315.1E-5139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000315.1E-5148164IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEWSTTSNVE NVRVAFMPPP WAPESSSFNS LHSFGFDPYA GIFTRHTNTK YIRRCFRFLT  60
QCGFLLCVTY ITSGNLYTPP ADTQTGPVIA VPEPEKIMNA YRFPNNNNEM MIKKKRLTSG  120
QLASLERSFQ EEIKLDSDRK VKLSRELGLQ PRQIAVWFQN RRARWKAKQL EQLYDSLRQE  180
YDVVSREKQM LHEEVKKLRA ILREQGLIKK PISTGTIKVS SEEDTAELPS MVVAHPRTEN  240
LNSIGHQIYG TEQYNNPMMA ASSGWSSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g003940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3520291e-148EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490871.11e-170PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-140ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLR0FIS61e-146R0FIS6_9BRAS; Uncharacterized protein
STRINGXP_010490871.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-143homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]