PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g003930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 455aa MW: 51451.4 Da PI: 4.8365

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g003930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	391	446	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT eE+e l+ +v+++ + W++I ++ ++Rt+ ++k++w++ Csa20g003930.1 391 RLFWTFEEEEMLKVGVEKFAAEakknmPWRKILEMGEkvfhETRTPADLKDKWRNM 446 678****************9******99877***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-8	385	448	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.805	386	447	IPR017877	Myb-like domain
SuperFamily	SSF46689	9.72E-10	389	448	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-4	390	449	IPR001005	SANT/Myb domain
CDD	cd11660	1.38E-10	394	448	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MKMRPKSILV RSSRKSPDPS LASPPDDEAT THCDTDDVEI VRNTFDERDV PHKKRHCLGT 60 TSETTDRGGG VSVEPPVLNL EACIVCEVAD ERVSRCCGID CLLSFHGECL YTDLGTSSSE 120 DLANPFCPYC WLKILAVKSK TLKEKTVEAE KAVFRYLDKE VKSRVEDGFD MSRGEKTPLI 180 EETDQLDDDQ GKVGTDKVTD EVVGASEEEE RVATENVQDA ENDQTAKDLT RVRTGAGQKL 240 DVLPFLSMQE SFSGKEQDQV KQNEKQRRRR RIEVGASEEE ERVATENFQD AENDKNGEDQ 300 TRVRTVAGQK VDVSPFFSTQ QSSSGKEQGQ VKQNEKRIRR RGIELNTIDR EMSIKGSSDE 360 RNGDDDIEQA TSSAQVTSPD ISFFKKDQRR RLFWTFEEEE MLKVGVEKFA AEAKKNMPWR 420 KILEMGEKVF HETRTPADLK DKWRNMVKMN KAAL*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MKMRPKSILV RSSRKSPDPS LASPPDDEAT THCDTDDVEI VRNTFDERDV PHKKRHCLGT  60
TSETTDRGGG VSVEPPVLNL EACIVCEVAD ERVSRCCGID CLLSFHGECL YTDLGTSSSE  120
DLANPFCPYC WLKILAVKSK TLKEKTVEAE KAVFRYLDKE VKSRVEDGFD MSRGEKTPLI  180
EETDQLDDDQ GKVGTDKVTD EVVGASEEEE RVATENVQDA ENDQTAKDLT RVRTGAGQKL  240
DVLPFLSMQE SFSGKEQDQV KQNEKQRRRR RIEVGASEEE ERVATENFQD AENDKNGEDQ  300
TRVRTVAGQK VDVSPFFSTQ QSSSGKEQGQ VKQNEKRIRR RGIELNTIDR EMSIKGSSDE  360
RNGDDDIEQA TSSAQVTSPD ISFFKKDQRR RLFWTFEEEE MLKVGVEKFA AEAKKNMPWR  420
KILEMGEKVF HETRTPADLK DKWRNMVKMN KAAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g003930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493735	2e-85	AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBank	AK117877	2e-85	AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBank	AY519543	2e-85	AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452274.1	0.0	PREDICTED: transcriptional regulator ATRX
TrEMBL	R0HA35	1e-165	R0HA35_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010452274.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27