PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g002890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 345aa MW: 37888.7 Da PI: 6.3199

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g002890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.8	2.2e-12	52	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky Csa20g002890.1 52 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 96 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.62E-16	46	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.942	47	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-6	50	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-18	50	99	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	51	99	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-10	52	96	IPR001005	SANT/Myb domain
CDD	cd00167	1.89E-7	54	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTSTNPVVAE ALPSEDATAE MTSTTVSSSL STEAGEAPEK KVRKAYTITK SRESWTEGEH 60 DKFLEALQLF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTLAHVP PPRPKRKAAH 120 PYPQKASKNA QMSLHVSMTF PPQINNLPGY TSWDDDTSAL LNIAVSGVTP PEDELDAFCG 180 PEVVVGSNGI PSESSPAASG IGSSSRTLSD SQDLRLAKPA PSMHGLPDFA EVYNFIGSVF 240 DPDSKGRMKK LKEMDPINFE TVLLLMRNLT VNLSNPDFEP SLVAVSAGTL IKNSTSYISF 300 DDFFLLAATV DQLSNASYGC CLKRTIRRHK QEEHMQFRSE NQWG*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTSTNPVVAE ALPSEDATAE MTSTTVSSSL STEAGEAPEK KVRKAYTITK SRESWTEGEH  60
DKFLEALQLF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTLAHVP PPRPKRKAAH  120
PYPQKASKNA QMSLHVSMTF PPQINNLPGY TSWDDDTSAL LNIAVSGVTP PEDELDAFCG  180
PEVVVGSNGI PSESSPAASG IGSSSRTLSD SQDLRLAKPA PSMHGLPDFA EVYNFIGSVF  240
DPDSKGRMKK LKEMDPINFE TVLLLMRNLT VNLSNPDFEP SLVAVSAGTL IKNSTSYISF  300
DDFFLLAATV DQLSNASYGC CLKRTIRRHK QEEHMQFRSE NQWG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250, ECO:0000269\|PubMed:17363273}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g002890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ937209	0.0	AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene).
GenBank	AK317012	0.0	AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03.
GenBank	AY519514	0.0	AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490751.1	0.0	PREDICTED: protein REVEILLE 4 isoform X1
Refseq	XP_019097693.1	0.0	PREDICTED: protein REVEILLE 4 isoform X1
Swissprot	Q6R0G4	1e-178	RVE4_ARATH; Protein REVEILLE 4
TrEMBL	R0FGY3	0.0	R0FGY3_9BRAS; Uncharacterized protein
STRING	XP_010490751.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15213	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02840.2	1e-154	LHY/CCA1-like 1

Publications ? help Back to Top
Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]