PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g002880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 119aa MW: 13851.7 Da PI: 10.9442 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.4 | 3.4e-13 | 18 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky Csa20g002880.1 18 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 62 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-17 | 12 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.942 | 13 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-7 | 16 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-19 | 16 | 65 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.6E-10 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-11 | 18 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-7 | 20 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
KRTSXKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ 60 KYFLKVQKNG TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMTFPPQI NNLPGYTSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g002880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937209 | 1e-142 | AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene). | |||
GenBank | AK317012 | 1e-142 | AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03. | |||
GenBank | AY042894 | 1e-142 | AY042894.1 Arabidopsis thaliana putative protein (F9G14_150) mRNA, complete cds. | |||
GenBank | AY081522 | 1e-142 | AY081522.1 Arabidopsis thaliana putative protein (At5g02840) mRNA, complete cds. | |||
GenBank | AY519514 | 1e-142 | AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452136.1 | 3e-81 | PREDICTED: protein REVEILLE 4-like isoform X3 | ||||
Refseq | XP_010452139.1 | 3e-81 | PREDICTED: protein REVEILLE 4-like isoform X3 | ||||
Refseq | XP_010452141.1 | 3e-81 | PREDICTED: protein REVEILLE 4 isoform X2 | ||||
Swissprot | Q6R0G4 | 3e-79 | RVE4_ARATH; Protein REVEILLE 4 | ||||
TrEMBL | A0A397XPA4 | 7e-78 | A0A397XPA4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A397XZ05 | 8e-78 | A0A397XZ05_BRACM; Uncharacterized protein | ||||
TrEMBL | D7M7W6 | 8e-78 | D7M7W6_ARALL; Uncharacterized protein | ||||
STRING | XP_010423810.1 | 2e-80 | (Camelina sativa) | ||||
STRING | XP_010452132.1 | 2e-80 | (Camelina sativa) | ||||
STRING | XP_010452137.1 | 2e-80 | (Camelina sativa) | ||||
STRING | XP_010452140.1 | 2e-80 | (Camelina sativa) | ||||
STRING | XP_010456368.1 | 1e-80 | (Camelina sativa) | ||||
STRING | XP_010490751.1 | 2e-80 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6356 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.3 | 9e-68 | LHY/CCA1-like 1 |
Publications ? help Back to Top | |||
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